% alzhub.org library filter
% Source: https://alzhub.org/research?author=Shi+Y
% 35 entries, in the order the page lists them. Built from alzhub.org's own records.
% 0 entries have no readable author in the source record and carry no author field.

@article{shi2016-27496552,
  author  = {Shi, Y. and Thrippleton, M. J. and Makin, S. D. and Marshall, I. and Geerlings, M. I. and de Craen, A. J. M. and van Buchem, M. A. and Wardlaw, J. M.},
  title   = {{Cerebral blood flow in small vessel disease: A systematic review and meta-analysis}},
  journal = {Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism},
  year    = {2016},
  doi     = {10.1177/0271678x16662891},
  pmid    = {27496552},
  url     = {https://doi.org/10.1177/0271678x16662891}
}

@article{zhang2022-35365609,
  author  = {Zhang, Y. and Ren, R. and Yang, L. and Zhang, H. and Shi, Y. and Okhravi, H. R. and Vitiello, M. V. and Sanford, L. D. and others},
  title   = {{Sleep in Alzheimer's disease: a systematic review and meta-analysis of polysomnographic findings}},
  journal = {Translational psychiatry},
  year    = {2022},
  doi     = {10.1038/s41398-022-01897-y},
  pmid    = {35365609},
  url     = {https://doi.org/10.1038/s41398-022-01897-y}
}

@article{bestrogowski2025-40716448,
  author  = {Best Rogowski, C. B. and Bredell, C. and Shi, Y. and Tien-Smith, A. and Szybka, M. and Fung, K. W. and others},
  title   = {{Long-term air pollution exposure and incident dementia: a systematic review and meta-analysis}},
  journal = {Lancet Planetary Health},
  year    = {2025},
  doi     = {10.1016/S2542-5196(25)00118-4},
  pmid    = {40716448},
  url     = {https://doi.org/10.1016/S2542-5196(25)00118-4}
}

@article{shao2023-37433427,
  author  = {Shao, L. and Shi, Y. and Xie, X. Y. and Wang, Z. and Wang, Z. A. and Zhang, J. E.},
  title   = {{Incidence and Risk Factors of Falls Among Older People in Nursing Homes: Systematic Review and Meta-Analysis}},
  journal = {Journal of the American Medical Directors Association},
  year    = {2023},
  doi     = {10.1016/j.jamda.2023.06.002},
  pmid    = {37433427},
  url     = {https://doi.org/10.1016/j.jamda.2023.06.002}
}

@article{shi2023-37480061,
  author  = {Shi, Y. and Lin, F. and Li, Y. and Wang, Y. and Chen, X. and Meng, F. and Ye, Q. and Cai, G.},
  title   = {{Association of pro-inflammatory diet with increased risk of all-cause dementia and Alzheimer's dementia: a prospective study of 166,377 UK Biobank participants}},
  journal = {BMC medicine},
  year    = {2023},
  doi     = {10.1186/s12916-023-02940-5},
  pmid    = {37480061},
  url     = {https://doi.org/10.1186/s12916-023-02940-5}
}

@article{shi2020-31336382,
  author  = {Shi, Y. and Gu, L. and Wang, Q. and Gao, L. and Zhu, J. and Lu, X. and Zhou, F. and Zhu, D. and others},
  title   = {{Platelet Amyloid-β Protein Precursor (AβPP) Ratio and Phosphorylated Tau as Promising Indicators for Early Alzheimer's Disease}},
  journal = {The journals of gerontology. Series A, Biological sciences and medical sciences},
  year    = {2020},
  doi     = {10.1093/gerona/glz005},
  pmid    = {31336382},
  url     = {https://doi.org/10.1093/gerona/glz005}
}

@article{shi2017-28959956,
  author  = {Shi, Y. and Yamada, K. and Liddelow, S. A. and Smith, S. T. and Zhao, L. and Luo, W. and Tsai, R. M. and Spina, S. and others},
  title   = {{ApoE4 markedly exacerbates tau-mediated neurodegeneration in a mouse model of tauopathy}},
  journal = {Nature},
  year    = {2017},
  doi     = {10.1038/nature24016},
  pmid    = {28959956},
  url     = {https://doi.org/10.1038/nature24016}
}

@article{yang2022-36108674,
  author  = {Yang, Y. and Shi, Y. and Schweighauser, M. and Zhang, X. and Kotecha, A. and Murzin, A. G. and Garringer, H. J. and Cullinane, P. W. and others},
  title   = {{Structures of α-synuclein filaments from human brains with Lewy pathology}},
  journal = {Nature},
  year    = {2022},
  doi     = {10.1038/s41586-022-05319-3},
  pmid    = {36108674},
  url     = {https://doi.org/10.1038/s41586-022-05319-3}
}

@article{shi2021-34588692,
  author  = {Shi, Y. and Zhang, W. and Yang, Y. and Murzin, A. G. and Falcon, B. and Kotecha, A. and van Beers, M. and Tarutani, A. and others},
  title   = {{Structure-based classification of tauopathies}},
  journal = {Nature},
  year    = {2021},
  doi     = {10.1038/s41586-021-03911-7},
  pmid    = {34588692},
  url     = {https://doi.org/10.1038/s41586-021-03911-7}
}

@article{costafreda2011-21272654,
  author  = {Costafreda, S. G. and Dinov, I. D. and Tu, Z. and Shi, Y. and Liu, C. Y. and Kloszewska, I. and Mecocci, P. and Soininen, H. and others},
  title   = {{Automated hippocampal shape analysis predicts the onset of dementia in mild cognitive impairment}},
  journal = {NeuroImage},
  year    = {2011},
  doi     = {10.1016/j.neuroimage.2011.01.050},
  pmid    = {21272654},
  url     = {https://doi.org/10.1016/j.neuroimage.2011.01.050}
}

@article{shi2018-29400714,
  author  = {Shi, Y. and Lin, S. and Staats, K. A. and Li, Y. and Chang, W. H. and Hung, S. T. and Hendricks, E. and Linares, G. R. and others},
  title   = {{Haploinsufficiency leads to neurodegeneration in C9ORF72 ALS/FTD human induced motor neurons}},
  journal = {Nature medicine},
  year    = {2018},
  doi     = {10.1038/nm.4490},
  pmid    = {29400714},
  url     = {https://doi.org/10.1038/nm.4490}
}

@article{xiang2021-34644146,
  author  = {Xiang, X. and Wind, K. and Wiedemann, T. and Blume, T. and Shi, Y. and Briel, N. and Beyer, L. and Biechele, G. and others},
  title   = {{Microglial activation states drive glucose uptake and FDG-PET alterations in neurodegenerative diseases}},
  journal = {Science translational medicine},
  year    = {2021},
  doi     = {10.1126/scitranslmed.abe5640},
  pmid    = {34644146},
  url     = {https://doi.org/10.1126/scitranslmed.abe5640}
}

@article{shi2018-30140051,
  author  = {Shi, Y. and Holtzman, D. M.},
  title   = {{Interplay between innate immunity and Alzheimer disease: APOE and TREM2 in the spotlight}},
  journal = {Nature reviews. Immunology},
  year    = {2018},
  doi     = {10.1038/s41577-018-0051-1},
  pmid    = {30140051},
  url     = {https://doi.org/10.1038/s41577-018-0051-1}
}

@article{wen2014-25521377,
  author  = {Wen, X. and Tan, W. and Westergard, T. and Krishnamurthy, K. and Markandaiah, S. S. and Shi, Y. and Lin, S. and Shneider, N. A. and others},
  title   = {{Antisense proline-arginine RAN dipeptides linked to C9ORF72-ALS/FTD form toxic nuclear aggregates that initiate in vitro and in vivo neuronal death}},
  journal = {Neuron},
  year    = {2014},
  doi     = {10.1016/j.neuron.2014.12.010},
  pmid    = {25521377},
  url     = {https://doi.org/10.1016/j.neuron.2014.12.010}
}

@article{gong2024-38182899,
  author  = {Gong, S. and Zhai, M. and Shi, J. and Yu, G. and Lei, Z. and Shi, Y. and Zeng, Y. and Ju, P. and others},
  title   = {{TREM2 macrophage promotes cardiac repair in myocardial infarction by reprogramming metabolism via SLC25A53}},
  journal = {Cell death and differentiation},
  year    = {2024},
  doi     = {10.1038/s41418-023-01252-8},
  pmid    = {38182899},
  url     = {https://doi.org/10.1038/s41418-023-01252-8}
}

@article{focke2019-30262517,
  author  = {Focke, C. and Blume, T. and Zott, B. and Shi, Y. and Deussing, M. and Peters, F. and Schmidt, C. and Kleinberger, G. and others},
  title   = {{Early and Longitudinal Microglial Activation but Not Amyloid Accumulation Predicts Cognitive Outcome in PS2APP Mice}},
  journal = {Journal of nuclear medicine : official publication, Society of Nuclear Medicine},
  year    = {2019},
  doi     = {10.2967/jnumed.118.217703},
  pmid    = {30262517},
  url     = {https://doi.org/10.2967/jnumed.118.217703}
}

@article{shi2016-28959468,
  author  = {Shi, Y. and Wardlaw, J. M.},
  title   = {{Update on cerebral small vessel disease: a dynamic whole-brain disease}},
  journal = {Stroke and vascular neurology},
  year    = {2016},
  doi     = {10.1136/svn-2016-000035},
  pmid    = {28959468},
  url     = {https://doi.org/10.1136/svn-2016-000035}
}

@article{shi2021-33723967,
  author  = {Shi, Y. and Murzin, A. G. and Falcon, B. and Epstein, A. and Machin, J. and Tempest, P. and Newell, K. L. and Vidal, R. and others},
  title   = {{Cryo-EM structures of tau filaments from Alzheimer's disease with PET ligand APN-1607}},
  journal = {Acta neuropathologica},
  year    = {2021},
  doi     = {10.1007/s00401-021-02294-3},
  pmid    = {33723967},
  url     = {https://doi.org/10.1007/s00401-021-02294-3}
}

@article{xiao2017-28440221,
  author  = {Xiao, M. F. and Xu, D. and Craig, M. T. and Pelkey, K. A. and Chien, C. C. and Shi, Y. and Zhang, J. and Resnick, S. and others},
  title   = {{NPTX2 and cognitive dysfunction in Alzheimer's Disease}},
  journal = {eLife},
  year    = {2017},
  doi     = {10.7554/elife.23798},
  pmid    = {28440221},
  url     = {https://doi.org/10.7554/elife.23798}
}

@article{xie2012-22776459,
  author  = {Xie, C. and Bai, F. and Yu, H. and Shi, Y. and Yuan, Y. and Chen, G. and Li, W. and others},
  title   = {{Abnormal insula functional network is associated with episodic memory decline in amnestic mild cognitive impairment}},
  journal = {NeuroImage},
  year    = {2012},
  doi     = {10.1016/j.neuroimage.2012.06.062},
  pmid    = {22776459},
  url     = {https://doi.org/10.1016/j.neuroimage.2012.06.062}
}

@article{wang2020-33081801,
  author  = {Wang, Y. and Shi, Y. and Huang, Y. and Liu, W. and Cai, G. and Huang, S. and Zeng, Y. and Ren, S. and others},
  title   = {{Resveratrol mediates mechanical allodynia through modulating inflammatory response via the TREM2-autophagy axis in SNI rat model}},
  journal = {Journal of neuroinflammation},
  year    = {2020},
  doi     = {10.1186/s12974-020-01991-2},
  pmid    = {33081801},
  url     = {https://doi.org/10.1186/s12974-020-01991-2}
}

@article{schweighauser2020-32461689,
  author  = {Schweighauser, M. and Shi, Y. and Tarutani, A. and Kametani, F. and Murzin, A. G. and Ghetti, B. and Matsubara, T. and Tomita, T. and others},
  title   = {{Structures of α-synuclein filaments from multiple system atrophy}},
  journal = {Nature},
  year    = {2020},
  doi     = {10.1038/s41586-020-2317-6},
  pmid    = {32461689},
  url     = {https://doi.org/10.1038/s41586-020-2317-6}
}

@article{sun2017-27930341,
  author  = {Sun, L. and Zhou, R. and Yang, G. and Shi, Y.},
  title   = {{Analysis of 138 pathogenic mutations in presenilin-1 on the in vitro production of Aβ42 and Aβ40 peptides by γ-secretase}},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year    = {2017},
  doi     = {10.1073/pnas.1618657114},
  pmid    = {27930341},
  url     = {https://doi.org/10.1073/pnas.1618657114}
}

@article{tcw2022-35750033,
  author  = {Tcw, J. and Qian, L. and Pipalia, N. H. and Chao, M. J. and Liang, S. A. and Shi, Y. and Jain, B. R. and Bertelsen, S. E. and others},
  title   = {{Cholesterol and matrisome pathways dysregulated in astrocytes and microglia}},
  journal = {Cell},
  year    = {2022},
  doi     = {10.1016/j.cell.2022.05.017},
  pmid    = {35750033},
  url     = {https://doi.org/10.1016/j.cell.2022.05.017}
}

@article{wang2021-33831349,
  author  = {Wang, C. and Xiong, M. and Gratuze, M. and Bao, X. and Shi, Y. and Andhey, P. S. and Manis, M. and Schroeder, C. and others},
  title   = {{Selective removal of astrocytic APOE4 strongly protects against tau-mediated neurodegeneration and decreases synaptic phagocytosis by microglia}},
  journal = {Neuron},
  year    = {2021},
  doi     = {10.1016/j.neuron.2021.03.024},
  pmid    = {33831349},
  url     = {https://doi.org/10.1016/j.neuron.2021.03.024}
}

@article{wang2018-29338452,
  author  = {Wang, K. K. and Yang, Z. and Zhu, T. and Shi, Y. and Rubenstein, R. and Tyndall, J. A. and Manley, G. T.},
  title   = {{An update on diagnostic and prognostic biomarkers for traumatic brain injury}},
  journal = {Expert review of molecular diagnostics},
  year    = {2018},
  doi     = {10.1080/14737159.2018.1428089},
  pmid    = {29338452},
  url     = {https://doi.org/10.1080/14737159.2018.1428089}
}

@article{li2018-29486118,
  author  = {Li, Y. and Ji, W. and Lu, Z. and Liu, L. and Shi, Y. and Ma, G. and Zhang, X.},
  title   = {{Positively Charged Polyprodrug Amphiphiles with Enhanced Drug Loading and Reactive Oxygen Species-Responsive Release Ability for Traceable Synergistic Therapy}},
  journal = {Journal of the American Chemical Society},
  year    = {2018},
  doi     = {10.1021/jacs.8b01641},
  pmid    = {29486118},
  url     = {https://doi.org/10.1021/jacs.8b01641}
}

@article{gorrie2014-25246588,
  author  = {Gorrie, G. H. and Fecto, F. and Radzicki, D. and Weiss, C. and Shi, Y. and Dong, H. and Zhai, H. and Fu, R. and others},
  title   = {{Dendritic spinopathy in transgenic mice expressing ALS/dementia-linked mutant UBQLN2}},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year    = {2014},
  doi     = {10.1073/pnas.1405741111},
  pmid    = {25246588},
  url     = {https://doi.org/10.1073/pnas.1405741111}
}

@article{cogswell2008-18525125,
  author  = {Cogswell, J. P. and Ward, J. and Taylor, I. A. and Waters, M. and Shi, Y. and Cannon, B. and Kelnar, K. and Kemppainen, J. and others},
  title   = {{Identification of miRNA changes in Alzheimer's disease brain and CSF yields putative biomarkers and insights into disease pathways}},
  journal = {Journal of Alzheimer's disease : JAD},
  year    = {2008},
  doi     = {10.3233/jad-2008-14103},
  pmid    = {18525125},
  url     = {https://doi.org/10.3233/jad-2008-14103}
}

@article{olivares2012-21875407,
  author  = {Olivares, D. and Deshpande, V. K. and Shi, Y. and Lahiri, D. K. and Greig, N. H. and Rogers, J. T. and Huang, X.},
  title   = {{N-methyl D-aspartate (NMDA) receptor antagonists and memantine treatment for Alzheimer's disease, vascular dementia and Parkinson's disease}},
  journal = {Current Alzheimer research},
  year    = {2012},
  doi     = {10.2174/156720512801322564},
  pmid    = {21875407},
  url     = {https://doi.org/10.2174/156720512801322564}
}

@article{kim2005-15585578,
  author  = {Kim, A. J. and Shi, Y. and Austin, R. C. and Werstuck, G. H.},
  title   = {{Valproate protects cells from ER stress-induced lipid accumulation and apoptosis by inhibiting glycogen synthase kinase-3}},
  journal = {Journal of cell science},
  year    = {2005},
  doi     = {10.1242/jcs.01562},
  pmid    = {15585578},
  url     = {https://doi.org/10.1242/jcs.01562}
}

@article{shi2012-22344463,
  author  = {Shi, Y. and Kirwan, P. and Smith, J. and MacLean, G. and Orkin, S. H. and Livesey, F. J.},
  title   = {{A human stem cell model of early Alzheimer's disease pathology in Down syndrome}},
  journal = {Science translational medicine},
  year    = {2012},
  doi     = {10.1126/scitranslmed.3003771},
  pmid    = {22344463},
  url     = {https://doi.org/10.1126/scitranslmed.3003771}
}

@article{chen2026-e0e0d44c,
  author  = {Chen, Z. and Lin, F. and Yang, K. and Tang, W. and Li, J. and Niu, J. and Shi, Y. and Zhou, S. and others},
  title   = {{Multimodal mediators connecting APOE4 to dementia}},
  journal = {Research Square},
  year    = {2026},
  doi     = {10.21203/rs.3.rs-11445203/v1},
  url     = {https://doi.org/10.21203/rs.3.rs-11445203/v1}
}

@article{meng2026-02371b89,
  author  = {Meng, W. and Zhang, J. and Zhang, S. and Shi, Y. and Wang, H.},
  title   = {{Aβ42 oligomers disrupt calcium homeostasis via Piezo1 and induce neurotoxicity in differentiated SH-SY5Y cells}},
  journal = {Research Square},
  year    = {2026},
  doi     = {10.21203/rs.3.rs-11212419/v1},
  url     = {https://doi.org/10.21203/rs.3.rs-11212419/v1}
}

@article{lin2026-052693e4,
  author  = {Lin, P. and Huang, L. and Xu, P. and Shi, Y. and Zhu, J. and Zhang, J. and He, M. and Guo, J.},
  title   = {{Risk factors for Dementia Public Stigma in Zhejiang Province, China: A Cross-Sectional Study}},
  journal = {Research Square},
  year    = {2026},
  doi     = {10.21203/rs.3.rs-10491650/v1},
  url     = {https://doi.org/10.21203/rs.3.rs-10491650/v1}
}